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Alexis Repressilator [ SAMPLE ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
laccI^0
lacI^1
lacI^r
lacI^P
tetR^0
tetR^1
tetR^r
tetR^P
cl^0
cl^1
cl^r
cl^P
Reactions
forward
backward
lacI^1 + cl^P <--> laccI^0
laccI^0 <--> lacI^1
lacI^1 + lacI^1 <--> lacI^1 + lacI^r + lacI^1
lacI^r <-->
lacI^r + lacI^r <--> lacI^r + lacI^P + lacI^r
lacI^P <-->
lacI^P + tetR^1 <--> tetR^0
tetR^0 <--> tetR^1
tetR^1 + tetR^1 <--> tetR^1 + tetR^r + tetR^1
tetR^r <-->
tetR^r + tetR^r <--> tetR^r + tetR^P + tetR^r
tetR^P <-->
tetR^P + cl^1 <--> cl^0
cl^0 <--> cl^1
cl^1 + cl^1 <--> cl^1 + cl^r + cl^1
cl^r <-->
cl^r + cl^r <--> cl^r + cl^P + cl^r
cl^P <-->
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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