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Aguilar Repressilator [ SAMPLE ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
LacI 0
LacI 1
LacI R
LacI P
TetR 0
TetR 1
TetR R
TetR P
CI 0
CI 1
CI R
CI P
Reactions
forward
backward
LacI 1 + CI P + CI P <--> LacI 0
LacI 0 <--> LacI 1
LacI P + TetR 1 + LacI P <--> TetR 0
TetR 0 <--> TetR 1
TetR P + CI 1 + TetR P <--> CI 0
CI 0 <--> CI 1
LacI 1 <--> LacI R + LacI 1
TetR 1 <--> TetR R + TetR 1
CI 1 <--> CI R + CI 1
LacI R <--> LacI P + LacI R
TetR R <--> TetR P + TetR R
CI R <--> CI P + CI R
LacI R <-->
LacI P <-->
TetR R <-->
TetR P <-->
CI R <-->
CI P <-->
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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