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IsabellaREP [ SAMPLE ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
lacI^0
lacI^1
lacI^r
lacI^P
tetR^0
tetR^1
tetR^r
tetR^P
cI^0
cI^1
cI^r
cl^P
Reactions
forward
backward
lacI^0 <--> lacI^1
lacI^1 + cl^P + cl^P <--> lacI^0 + cl^P + cl^P
lacI^1 <--> lacI^1 + lacI^r
lacI^r <-->
lacI^r <--> lacI^r + lacI^P
lacI^P <-->
tetR^0 <--> tetR^1
tetR^1 + lacI^P + lacI^P <--> tetR^0 + lacI^P + lacI^P
tetR^1 <--> tetR^1 + tetR^r
tetR^r <-->
tetR^r <--> tetR^r + tetR^P
tetR^P <-->
cI^0 <--> cI^1
cI^1 + tetR^P + tetR^P <--> cI^0 + tetR^P + tetR^P
cI^1 <--> cI^1 + cI^r
cI^r <-->
cI^r <--> cI^r + cl^P
cl^P <-->
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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