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BrantRepressilatorFinal [ SAMPLE ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
lacl^0
lacl^1
lacl^r
tetR^0
tetR^1
tetR^r
tetR^P
lacl^P
cI^0
cI^1
cI^r
cI^P
Reactions
forward
backward
lacl^0 <--> lacl^1
lacl^1 + cI^P + cI^P <--> lacl^0 + cI^P + cI^P
lacl^1 <--> lacl^1 + lacl^r
lacl^r <--> lacl^r + lacl^P
lacl^r <-->
lacl^P <-->
tetR^1 + lacl^P + lacl^P <--> tetR^0 + lacl^P + lacl^P
tetR^0 <--> tetR^1
tetR^1 <--> tetR^1 + tetR^r
tetR^r <--> tetR^r + tetR^P
tetR^r <-->
tetR^P <-->
cI^0 <--> cI^1
cI^1 + tetR^P + tetR^P <--> cI^0 + tetR^P + tetR^P
cI^1 <--> cI^1 + cI^r
cI^r <-->
cI^r <--> cI^r + cI^P
cI^P <-->
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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