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WatkinsRepressilator [ SAMPLE ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
lac^0
lacl^1
lacl^r
lacl^P
teR^0
tetR^1
tetR^r
terR^P
cl^0
cl^1
cl^r
cl^P
Reactions
forward
backward
lacl^1 + cl^P <--> lac^0
lac^0 <--> lacl^1
lacl^1 <--> lacl^1 + lacl^r
lacl^r <--> lacl^r + lacl^P
lacl^r <-->
lacl^P <-->
lacl^P + tetR^1 <--> teR^0
teR^0 <--> tetR^1
tetR^1 <--> tetR^1 + tetR^r
tetR^r <--> tetR^r + terR^P
terR^P + cl^1 <--> cl^0
cl^0 <--> cl^1
cl^1 <--> cl^1 + cl^r
cl^r <--> cl^r + cl^P
tetR^r <-->
terR^P <-->
cl^r <-->
cl^P <-->
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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