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hwk3 [ Gene Oscillator with Repressor Binding Cooperativity n=3 ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
gA0
gB0
gC0
gA1
gB1
gC1
rA
rB
rC
pA
pB
pC
Reactions
forward
backward
gA1 + pB + pB + pB <--> gA0
gB1 + pC + pC + pC <--> gB0
gC1 + pA + pA + pA <--> gC0
gA1 <--> gA1 + rA
gB1 <--> gB1 + rB
gC1 <--> gC1 + rC
rA <--> rA + pA
rB <--> rB + pB
rC <--> rC + pC
rA <-->
rB <-->
rC <-->
pA <-->
pB <-->
pC <-->
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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