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hollys_repressilator [ SAMPLE ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
AO
BO
CO
A1
B1
C1
Ar
Br
Cr
Ap
Bp
Cp
Reactions
forward
backward
A1 + Cp + Cp <--> AO + Cp + Cp
AO <--> A1
A1 <--> Ar
Ar <--> Ap + Ar
Ap + B1 + Ap <--> BO + Ap + Ap
BO <--> B1
B1 <--> Br
Br <-->
Bp <-->
Br <--> Br + Bp
Cr <--> Cr + Cp
C1 <--> Cr
Bp + C1 + Bp <--> CO + Bp + Bp
CO <--> C1
Ar <-->
Ap <-->
Cr <-->
Cp <-->
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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