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zcfilosi-Repressilator-Final [ SAMPLE ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
LacI0
LacI1
LacIr
LacIp
tetR0
tetR1
tetRr
tetRp
cI0
cI1
cIr
cIp
Reactions
forward
backward
LacI1 + cIp + cIp <--> LacI0
LacI1 <--> LacIr + LacI1
LacIr <--> LacIp + LacIr
tetR1 + LacIp + LacIp <--> tetR0
tetR1 <--> tetRr + tetR1
tetRr <--> tetRp + tetRr
cI1 + tetRp + tetRp <--> cI0
cI1 <--> cIr + cI1
cIr <--> cIp + cIr
LacIp <-->
tetRp <-->
cIp <-->
LacIr <-->
tetRr <-->
cIr <-->
LacI0 <--> LacI1
tetR0 <--> tetR1
cI0 <--> cI1
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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